PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112487.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 265aa    MW: 30464.9 Da    PI: 9.7665
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.35e-3080135258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++v Y+eC++NhAas Ggh+vDG gEfm+s geegta++l CaAC+CHR+FHR+ev+
  XP_009112487.1  80 RRVSYRECQRNHAASSGGHVVDGWGEFMSS-GEEGTAESLLCAACDCHRSFHRKEVD 135
                     5799*************************9.999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-3368144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.9E-2882134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-2884134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.48484133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.09E-17194262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28195263IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-28201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEVREKKDNK IEMERRQSSA NQNIQDPRLP PYTYSQTADK EKPTTKRNGS DRDPDLDTNP  60
TSIAPAPRSY ARPQTTSPTR RVSYRECQRN HAASSGGHVV DGWGEFMSSG EEGTAESLLC  120
AACDCHRSFH RKEVDGMFVV KFNSFGHSQR PLVNRHVSPI MMSFGGGGGG RDPAESSTED  180
LNRFHQALSG NGVDQFQYHP KKRFRTKFNQ EQKERMFEFA EKIGWRMNKS EDEEVNRFCR  240
EINVKRQVFK VWMHNNKQAA KKKET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-192022571873ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325500.0AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112487.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW71e-151ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLM4F8130.0M4F813_BRARP; Uncharacterized protein
STRINGBra037224.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-147homeobox protein 24